Analysis and visualisations for “JMIR paper title here”
Carlos Granell et al.
12 April, 2019
License
This document is licensed under a Creative Commons Attribution 4.0 International License.
Metadata
Required libraries and runtime environment description.
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## date 2019-04-12
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## [1] C:/Users/cgranell/Documents/R/win-library/3.5
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##
## P -- Loaded and on-disk path mismatch.This document is versioned in a public git repo: https://github.com/cgranell/emi-mhealth.
This R notebook contains the code to produce the final figures and tables of the paper.
Data
Input datasets are the processed datasets within the emidata data package. The package code is available in a public git repo: https://github.com/cgranell/emidata. We analyse the follwing three datasets of the emidata package:
- ipapers2018_psydata (extracted data items related to psychology) has
112records and20columns. - ipapers2018_csdata (extracted data items related to tech/cs) has
129records and26columns. - ipapers2018 (list of analysed papers) has
136records and9columns.
The final number of papers to analyse is 111.
There are 14 distinct mental disorders (out of 25). About 25.2% (N=28) are categorised according to Section II of DSM-5 manual. About 74.8% (N=83) are 23-Dual, 24-Multiple or 25-Suicidal behavior disorder/nonsuicidal self-injury. In the following analysis, categories 23 and 24 are merged into a new one: 26-Various. Therefore, dual and multiple disorders are jointly treated.
Key figures
- IN: It is included in the paper
- IN, PRODUCTION: It is (almost) in final form
- IN, DRAFT: It is a exploratory figure. Aesthetics is not considered yet.
- OUT: It is not included in the paper.
Figure 1 (IN, PRODUCTION)
Proportional stacked area chart: Temporal distribution of papers colored by assessment type. The sum of each year is always equal to hundred, and the value of each group (assessment type) is in percentages.
Figure 2 (OUT)
Stacked barchart: Distribution of papers per mental disorders, colored by assessment type.
Figure 2 (IN, PRODUCTION)
Proportional (stacked) barchart: Distribution of papers per mental disorders, colored by assessment type. Note that we draw two main colors in the legend: purple represents no assessment at all, the range of greens denotes distinct types of assessment.
Figure 3 (IN, PRODUCTION)
Linechart: Distribution of papers (Total and top6 mental disorders) per year.
Figure 4 (OUT)
Table (Example 1): Distribution of papers (apps) per mental disorder. How many apps are related to each mental disorder? Per each mental disorder, assessment (yes/no) and year, we show the paper id and appname.
| Mental Disorder | Assessment | Year | Paper id | App Name |
|---|---|---|---|---|
| 1-Neurodevelopmental disorders | NO | 2016 | 304 | My MFG |
| YES | 2015 | 125 | iCanLearn | |
| 2016 | 142 | LifePal | ||
| 10-Feeding and eating disorders | NO | 2017 | 265 | Jorvie |
| YES | 2015 | 092 | RR: Eating Disorder Management | |
| 2016 | 007 | Student Bodies–Eating Disorders (SB-ED) | ||
| 12-Sleep-wake disorders | NO | 094 | SleepIO | |
| 2017 | 103 | SleepIO | ||
| YES | 181 | Sleepcare | ||
| 16-Substance-related and addictive disorders | NO | 2016 | 014 | CET Application |
| 065 | Smoke Mind | |||
| 2017 | 021 | CET Application | ||
| 307 | A-CHESS | |||
| YES | 2015 | 013 | A-CHESS | |
| 217 | SmartQuit | |||
| 2016 | 038 | Smart-T | ||
| 2017 | 171 | Mind the Moment | ||
| 2018 | 039 | Smart-T | ||
| 127 | SEVA | |||
| 18-Personality disorders | 2017 | 106 | EMOTEO | |
| 2-Schizophrenia spectrum and other psychotic disorders | NO | 2015 | 305 | Actissist |
| 2016 | 273 | TechCare | ||
| 2017 | 260 | SlowMo | ||
| YES | 2013 | 089 | FOCUS | |
| 2014 | 120 | FOCUS | ||
| 2016 | 117 | PRIME | ||
| 2017 | 087 | Heal Your Mind | ||
| 090 | iCOPE | |||
| 23-Comorbid disorders | NO | 2014 | 281 | The Moment |
| 2017 | 140 | SPIRIT | ||
| 185 | MoodTrainer | |||
| 2018 | 220 | WorkingWell | ||
| YES | 2013 | 126 | myCompass | |
| 2014 | 282 | SmartCAT | ||
| 2016 | 029 | iBobbly | ||
| 2017 | 034 | Wellframe | ||
| 110 | ACT Daily APP | |||
| 119 | PeerTECH App | |||
| 131 | IntelliCare Suite | |||
| 177 | Headspace | |||
| 294 | TODAY! | |||
| 24-Various disorders | NO | 2015 | 086 | NA |
| 2016 | 097 | Stop-Cannabis | ||
| YES | 2014 | 290 | Enuresis Trainer | |
| 2017 | 297 | CASA-CHESS | ||
| 2018 | 232 | SMI-CM | ||
| 300 | Learn To Quit | |||
| 25-Suicidal behavior disorder/nonsuicidal self-injury | NO | 2013 | 275 | NA |
| 2016 | 245 | Blue Ice | ||
| YES | 2017 | 012 | NA | |
| 026 | Virtual Hope Box (VHB) | |||
| 124 | iBobbly | |||
| 2018 | 022 | Blue Ice | ||
| 030 | Blue Ice | |||
| 3-Bipolar and related disorders | 2015 | 048 | PRISM | |
| 258 | SIMPLe | |||
| 2016 | 042 | MyT | ||
| 226 | SIMPLe | |||
| 2017 | 138 | SIMPLe | ||
| 4-Depressive disorders | NO | 2015 | 035 | Kokoro-App |
| 2016 | 203 | MyGamePlan | ||
| 303 | NA | |||
| 2017 | 077 | NA | ||
| 188 | Moodivate | |||
| 235 | Dcombat | |||
| YES | 2013 | 058 | Get Happy Program | |
| 2014 | 051 | NA | ||
| 2015 | 023 | NA | ||
| 152 | MedLink | |||
| 231 | SuperBetter | |||
| 266 | NA | |||
| 2016 | 071 | NA | ||
| 183 | Mobile Sensing and Support | |||
| 187 | MoodHacker | |||
| 2017 | 114 | Thought Challenger | ||
| 263 | Kokoro-App | |||
| 279 | PRIME-D | |||
| 2018 | 020 | TODAC TODAC | ||
| 063 | Kokoro-App | |||
| 082 | 7Cups | |||
| 115 | SPSRS | |||
| 5-Anxiety disorders | NO | 2013 | 091 | GET.ON PAPP |
| 123 | NA | |||
| 2014 | 057 | CBT Assistant | ||
| 105 | GET.ON PAPP | |||
| 2015 | 027 | NA | ||
| 2017 | 192 | AnxietyCoach | ||
| 2018 | 025 | Lantern | ||
| YES | 2013 | 308 | NA | |
| 2015 | 286 | PsychAssist | ||
| 2016 | 122 | Ångesthjälpen | ||
| 285 | NA | |||
| 2017 | 050 | Public Speech Trainer (PST) | ||
| 291 | Agoraphobia Free; Stress Free | |||
| 2018 | 163 | NA | ||
| 6-Obsessive-Compulsive and related disorders | 2014 | 056 | Mayo Clinic Anxiety Coach | |
| 2016 | 262 | Geo-Feedback App | ||
| 2017 | 044 | Live OCD Free | ||
| 7-Trauma and stressor-related disorders | 2014 | 062 | PE Coach | |
| 2015 | 061 | PE Coach | ||
| 069 | PE Coach | |||
| 121 | Life Armor; PE Coach; Positive Activity Jackpot; Eventful; Tactical Breather; Virtual Hope Box; Daily Yoga; Simply Yoga | |||
| 160 | PTSD Coach | |||
| 2016 | 118 | PTSD Coach | ||
| 301 | RELAX | |||
| 306 | NA | |||
| 2017 | 015 | PTSD Coach | ||
| 037 | Life Armor; PE Coach; Positive Activity Jackpot; Eventful; Tactical Breather; Virtual Hope Box; Daily Yoga; Simply Yoga | |||
| 049 | PE Coach | |||
| 088 | PTSD Coach | |||
| 302 | NA |
Figure 4 (IN, DRAFT)
Table (Example 2): Compact distribution of papers (apps) per mental disorder, grouping the references per app. The mumber(s) in brackets next to the app name is the reference(s) in which the app is mentioned.
| Mental Disorder | References by app |
|---|---|
| Personality disorders | EMOTEO (106) |
| Obsessive-Compulsive and related disorders | Geo-Feedback App (262), Live OCD Free (044), Mayo Clinic Anxiety Coach (056) |
| Sleep-wake disorders | Sleepcare (181), SleepIO (094;103) |
| Feeding and eating disorders | Jorvie (265), RR: Eating Disorder Management (092), Student Bodies–Eating Disorders (SB-ED) (007) |
| Neurodevelopmental disorders | iCanLearn (125), LifePal (142), My MFG (304) |
| Bipolar and related disorders | MyT (042), PRISM (048), SIMPLe (258;226;138) |
| Various disorders | CASA-CHESS (297), Enuresis Trainer (290), Learn To Quit (300), SMI-CM (232), Stop-Cannabis (097), NA (086) |
| Suicidal behavior disorder/nonsuicidal self-injury | iBobbly (124), Virtual Hope Box (VHB) (026), NA (275;012), Blue Ice (245;022;030) |
| Schizophrenia spectrum and other psychotic disorders | Actissist (305), Heal Your Mind (087), iCOPE (090), PRIME (117), SlowMo (260), TechCare (273), FOCUS (089;120) |
| Substance-related and addictive disorders | Mind the Moment (171), SEVA (127), SmartQuit (217), Smoke Mind (065), A-CHESS (013;307), CET Application (014;021), Smart-T (038;039) |
| Trauma and stressor-related disorders | RELAX (301), Life Armor; PE Coach; Positive Activity Jackpot; Eventful; Tactical Breather; Virtual Hope Box; Daily Yoga; Simply Yoga (121;037), NA (306;302), PE Coach (062;061;069;049), PTSD Coach (160;118;015;088) |
| Comorbid disorders | ACT Daily APP (110), Headspace (177), iBobbly (029), IntelliCare Suite (131), MoodTrainer (185), myCompass (126), PeerTECH App (119), SmartCAT (282), SPIRIT (140), The Moment (281), TODAY! (294), Wellframe (034), WorkingWell (220) |
| Anxiety disorders | Agoraphobia Free; Stress Free (291), Ångesthjälpen (122), AnxietyCoach (192), CBT Assistant (057), Lantern (025), PsychAssist (286), Public Speech Trainer (PST) (050), GET.ON PAPP (091;105), NA (123;308;027;285;163) |
| Depressive disorders | 7Cups (082), Dcombat (235), Get Happy Program (058), MedLink (152), Mobile Sensing and Support (183), MoodHacker (187), Moodivate (188), MyGamePlan (203), PRIME-D (279), SPSRS (115), SuperBetter (231), Thought Challenger (114), TODAC TODAC (020), Kokoro-App (035;263;063), NA (051;023;266;071;303;077) |
Figure 4 (IN/OUT?, DRAFT)
Circular barplot (Example 3): Each cell means one occurence of the app in a paper.
Figure 5 (IN, DRAFT) - ONGOING
Bubble plot: Distribution of papers per mental disorder and technology variables (sensor capabilities and features)
In the following, some exploratory charts are shown on the way to reach the bubble plot, which is the last chart. None of the following charts are in production stage, only drafted. Please, do not pay much attention to the color palette and aesthetics yet.
22.5% of papers use at least a sensing capability (N=25). The use of the acc and gyr is residual; gps and mic are more significant, but in a low proportion: gps = 9.91%, mic = 10.8%, cam = 7.21% . Note that some papers use both type of sensors, so the sum of percentages of gps, mic and cam exceeds the total percentage of papers that use at least a sensing capability.
100% of papers provide/offer/use at least a feature capability (N=111).
5.41% of papers implement/use at least advanced analytics (N=6).
This is the final bubble plot.
